Run OmicsSIMLA

OmicsSIMLA can be launched by typing
OmicsSIMLA <options>

To get a quick overview of all options available in OmicsSIMLA, type
OmicsSIMLA --h
or
OmicsSIMLA --help

If you are new to OmicsSIMLA, you are strongly encouraged to try the web-based user interface to generate the command line. The web-based user interface can be accessed at: http://omicssimla.sourceforge.net/generateCommand.html.

The UI will generate a command line for running OmicsSIMLA. Simply execute OmicsSIMLA again using the command line to start the simulations.

Run the R version of pWGBSSimla
We provided an R interface to simulate the bisulfite sequencing data (i.e., the pWGBSSimla module in OmicsSIMLA). Please see the user manual for the detailed descriptions of the R functions to perform the simulations.